GgaEX6003300 @ galGal4
Exon Skipping
Gene
ENSGALG00000022962 | OVST
Description
ovostatin precursor [Source:RefSeq peptide;Acc:NP_990557]
Coordinates
chr1:75785043-75786522:-
Coord C1 exon
chr1:75786439-75786522
Coord A exon
chr1:75785629-75785805
Coord C2 exon
chr1:75785043-75785124
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGGCATCTTTTCTTCACCAGGTG
3' ss Score
10.26
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
Exon sequences
Seq C1 exon
ATGATGTCATTTCTCAAGATGTTGCTATAGATCTACCTACAAATGTGGTAGAAGGATCACCCAGACCTTCCTTTTCTGTTGTTG
Seq A exon
GTGACATCATGGGCACTGCCATTCAGAACGTGCACCAGCTCCTTCAGATGCCATTTGGCAATGGGGAACAGAACATGGTCCTGTTTGCACCCAATATCTATGTACTGGATTATCTGGACAAGACAAGACAGCTGAGTGAAGATGTGAAGTCCAAGACCATTGGATACTTAGTGAGCG
Seq C2 exon
GCTACCAGAAGCAGCTATCATACAAACATCCTGATGGATCCTACAGCACATTTGGCATTAGAGATAAAGAAGGGAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022962-'32-32,'32-31,34-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTCATTTCTCAAGATGTTGCT
R:
CAGGTGTTCCCTTCTTTATCTCT
Band lengths:
165-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]