BtaEX0001203 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101255977-101259468:+
Coord C1 exon
chr5:101255977-101256060
Coord A exon
chr5:101256599-101256775
Coord C2 exon
chr5:101259291-101259468
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCTGTATTTCATTCCTCAGGTG
3' ss Score
9.88
5' ss Seq
GTGGTGAGA
5' ss Score
5.46
Exon sequences
Seq C1 exon
AAACTGGAGGATCTGAAAAGTTGTCATTAAAACTTCCTTCAAATGTGGTTGAAGGTTCTGCCAGGGCGACATATTCAGTTTTGG
Seq A exon
GTGATATACTAGGCTCTGCAATGCAAAATCTTCAGAATCTTCTCCGGATGCCCTATGGTTGTGGAGAACAGAATATGGTCCTTTTCACCCCTAACATCTACGTTCTGAACTATCTAAATGAGACAGGACAGCTCACTGAGAAGATCAAGTCCAAAGCCATCAGCTACCTCATCAGTG
Seq C2 exon
CACTCAATTGTCCGCAATGCTCTCTTCTGCCTGGAAAGGGCCTGGCAATCTGCCTCAGAGGCCCAAGGAAGTTTTGTCTATACCAAGGCGTTATTGGCCTATGCCTTCGCACTAGCAGGAGACCAAGCCAAACGAAACGAACTGCTTGAGTCACTACACAAAGAGGCTGTAAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461_MULTIEX1-14/18=13-18
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(23.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGATCTGAAAAGTTGTCA
R:
TGTGTAGTGACTCAAGCAGTTCG
Band lengths:
242-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development