RnoEX6015258 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161812447-161813525:-
Coord C1 exon
chr4:161813442-161813525
Coord A exon
chr4:161812807-161812983
Coord C2 exon
chr4:161812447-161812537
Length
177 bp
Sequences
Splice sites
3' ss Seq
TATTTCTCTGTATTCCTCAGGCG
3' ss Score
8.92
5' ss Seq
GCGGTAAGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATGCTGAGTTACAGGAAAATTGGACACTGGATCTTCCAGCCAATGTGGTTGAAGGATCTGCCAGGGCTACACAGTCCGTTTTGG
Seq A exon
GCGATATACTAGGCTCTGCGATGCAAAACCTCCAGAATCTTCTCCAGATGCCCTATGGCTGTGGGGAACAAAACATGGTCCTCTTCGTCCCTAACATCTACGTTCTGGAGTATCTCAATGAGACACAGCAGCTGACAGAGGCGATCAAGTCCAAGGCCATTAGCTACCTCATCAGCG
Seq C2 exon
GGTACCAGAGGCAGCTGAACTATCAGCACAGTGACGGTTCATACAGCACATTCGGGGACCGCGGTATGAGGCACAGTCAGGGAAACACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'26-34,'26-32,27-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAGTTACAGGAAAATTGGACA
R:
GTGTTTCCCTGACTGTGCCTC
Band lengths:
171-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]