DreEX6014991 @ danRer10
Exon Skipping
Gene
ENSDARG00000078183 | A2ML1 (10 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:3679727-3681009:+
Coord C1 exon
chr3:3679727-3679810
Coord A exon
chr3:3680647-3680823
Coord C2 exon
chr3:3680934-3681009
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTATTGTCGTAGGGG
3' ss Score
8.75
5' ss Seq
GTGGTATGA
5' ss Score
5.27
Exon sequences
Seq C1 exon
GAAGCATTCTTTCAGAGAGCGTGAAGATCACATTTCCAACAAAAGTCATCCAGGGATCAGCCAGATGCTCCGTATCAGCCATAG
Seq A exon
GGGACATCATGGGTCGTGCACTGAAGAATTTGGCAAACTTGCTACAGATGCCTTATGGCTGTGGAGAACAGAACATGATCATTCTCGCTCCCAATATTTACACTCTGCAGTATCTGAAAGTAACGGCACAGCTCACCCCAGCCATCCAAGACACTGCCGCGAGTTATCTTCTGAGTG
Seq C2 exon
GATATCAAAGAGAGCTGAACTACAGGCACAGCGACGGTTCATTCAGCACTTTTCCTTATTCACCATCCAATACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078183-'28-33,'28-32,29-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(10.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCATTCTTTCAGAGAGCGTG
R:
TTGGATGGTGAATAAGGAAAAGTGC
Band lengths:
154-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]