RnoEX6015273 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161877439-161880021:-
Coord C1 exon
chr4:161879938-161880021
Coord A exon
chr4:161878843-161879019
Coord C2 exon
chr4:161877439-161877520
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTCTCCGTTTCTGCCTTTAGGAG
3' ss Score
11.4
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTACCAAAGCCTCAAAGCAAATAACTCTGGAATTGCCAAACGATGTAGTGGAAGGATCAGCCAGATCTTTTGTCACTTTTGTGG
Seq A exon
GAGACATTCTGGGAGTCGCAATGCAGAATCTAGAGAGCCTTCTCCAGACACCCTATGGCTGCGGTGAACAGAACATTGCCCAGCTGGCAGCTGACATTTATATACTTGACTACCTCAACGCTACCAAACAGCTGACAGAAGAGGTCAGATCCAAGGCTCTTCTTCTCTTATCTAAAG
Seq C2 exon
GTTACCAGAAACACTTGTCTTTCAAGAACTATGATGGCTCATACGATGTGTTCTGCCATAACAACCAGGAAGGAAGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'28-26,'28-25,29-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCAAAGCCTCAAAGCAAA
R:
CAGACACTTCCTTCCTGGTTGT
Band lengths:
166-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]