BtaEX6024046 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101171759-101174063:+
Coord C1 exon
chr5:101171759-101171842
Coord A exon
chr5:101173040-101173216
Coord C2 exon
chr5:101173982-101174063
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTGTCCTGTTTTTAGGGG
3' ss Score
9.28
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCACCAAAGTCTCCAGGCAGGTAGATTTGAATTTGACAAATGATGTCGTAGAAGGATCAACCAGGGCCTTTTTCACTGTTGTGG
Seq A exon
GGGATATTCTAGGACTTGCAATACAGAATCTGGAGAATCTTTTCCAAATGCCCTATGGAGGTGGAGAACAGAATATTGCCCTGCTAGCATCCAATACCTACATCCTAGACTATCTGAAATCTACTAAACAACTGACAGAGGAAGTTAAATCTAAAGCTTTATTCTTCTTATCTAATG
Seq C2 exon
GTTATCAGAAGCAGTTGTCTTTCAAAAACTTGGATGGTTCCTATAGTCTGTTTTGGCAGAGGAATCAGGAAGGAAGCATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'21-23,'21-22,22-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(11.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGTCTCCAGGCAGGTA
R:
CGTATGCTTCCTTCCTGATTCCT
Band lengths:
164-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]