GgaEX6003326 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75827626-75832461:-
Coord C1 exon
chr1:75832378-75832461
Coord A exon
chr1:75831284-75831460
Coord C2 exon
chr1:75827626-75827707
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTTGTATCTTTAATTCTCAGGAG
3' ss Score
7.55
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
GCACAACAGTTTCTGAACCAGTGCTTCTCAGCCTGCCAAGAAATGTAGTGCAGGGATCAGCCAGAGTTTATTTCTCTGTCATTG
Seq A exon
GAGATATTTTGGGTACAGCATTAAGGAACATGGAAAACCTCCTCCACATGCCTTACGGCTGTGGAGAACAGAACATGGCGTTGTTCACACCCAACATCTATGTCCTGGATTATCTGAATAAGACTGGGCAGCTGACGGAAGAGATTAGAGTCAAGAGTACTGGATATTTAACCACAG
Seq C2 exon
GGTACCAGAAACAGCTTTCATACAAACACCAGGATGGGTCCTACAGCTCCTTTGGGACACGAGACAAGGAAGGAAATGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACAGTTTCTGAACCAGTGC
R:
ACATTTCCTTCCTTGTCTCGTGT
Band lengths:
162-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]