MmuEX6007311 @ mm9
Exon Skipping
Gene
ENSMUSG00000047228 | BC048546
Description
cDNA sequence BC048546 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128500737-128503346:-
Coord C1 exon
chr6:128503263-128503346
Coord A exon
chr6:128502171-128502347
Coord C2 exon
chr6:128500737-128500818
Length
177 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCTTTCTGCCTTTAGGGG
3' ss Score
11.66
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTACCAAAGCCTCAAAACAAACACTTCTGGAATTGCCAAGCAATGTAGTAGAAGGTTCAGTCAGATCTTTTGTCACCATTGTGG
Seq A exon
GGGACATTCTGGGAGTCGCAATGCAGAATCTGGAGAGCCTTCTCCAAATGCCCTATGGGTGTGGTGAACAGAACATTGCCCAGCTAGCATCTGACGTTTACATACTGGACTACCTGAAAGCTACCGACCAGCTGACAGAAGAACTCAAATCTAAGGCTCAGCGTCTCTTATCCAATG
Seq C2 exon
GTTACCAAAATCACTTGTCTTTCAAAAACTATGATGGGTCCTACGATGTGTTCTGCCAGAGCAACCAGGAAGGGAGCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'23-23,'23-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
C2:
PF076789=A2M_comp=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGCCTCAAAACAAACACT
R:
CATGTGCTCCCTTCCTGGTTG
Band lengths:
164-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: