GgaEX1004306 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79358289-79360324:+
Coord C1 exon
chr1:79358289-79358465
Coord A exon
chr1:79358944-79359028
Coord C2 exon
chr1:79360168-79360324
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTTGCTTTAACTCGCTGTAGGTT
3' ss Score
5.93
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
Exon sequences
Seq C1 exon
GTGACCTCATGGGCACTGCCATGCAGAACCTGCACCAGCTACTCCAAATGCCGTTTGGTTGTGGTGAACAGAACATGGTCCTGTTTGCACCCAACATCTATGTCCTGGACTATCTGAACAAGACAGGACAGCTGAGTGAGGAGGTCAAATCCAAGGCCATCGGATACTTAGTGAGCG
Seq A exon
GTTATCAGAGGCAGATGAACTACAAGCACCCAGATGGCTCTTACAGTACCTTTGGACCACGTTATCGCCAACCGGGGAACACCTG
Seq C2 exon
GCTCACAGCCTTTGTCCTGAAGTCCTTTGCCCGGGCCCGGTCTCACATCTTCATAGATGAAAAGCACATCCAGGATGCTTTGATCTGGCTCAGTCAAAATCAGAAGGAGAATGGCTGCTTCCGCAGTTCTGGGGTGCTCCTGAACAATGCCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'37-42,'37-40,38-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF105694=Thiol-ester_cl=WD(100=51.7),PF076789=A2M_comp=PU(0.4=1.7)
A:
PF076789=A2M_comp=FE(11.2=100)
C2:
PF076789=A2M_comp=FE(20.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCAGCTACTCCAAATGC
R:
TTCAGGACAAAGGCTGTGAGC
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]