GgaEX1004312 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79348962-79351356:+
Coord C1 exon
chr1:79348962-79349025
Coord A exon
chr1:79349479-79349621
Coord C2 exon
chr1:79351207-79351356
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCTCTTGTTTTGTTTGCTAGTCA
3' ss Score
6.04
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGATGGCCAAGGGAATCATCAAGAAAGCAGGCACCAGCATTCTGGATTTGGACAAGGAAAGTG
Seq A exon
TCAATGGGGTCTTCATACTACAGCTGCCTGTGGAAGCTGACTTTGCTCCTGTGGCCCAAGTGCTTGTCTATACTGTTACCCCCAGCAGGGAGGTGATTGCAGATTCAACAAAGTTCAACATAGAAAAATGTTTCAACAATAAG
Seq C2 exon
GTGGGCTTGAGCTTCTCTTCTTCTGAAGGCCTGCCTTCTTCTGACACTCACTTACTGTTCAGAGCCTCCCCAAAATCCCTTTGTGCTGTCCGTGCTGTGGACAGTAGTGTTCTACTCATGAAGCCTGAAGCTGATCTGTCACACAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(14.1=100)
A:
PF077039=A2M_N_2=FE(31.5=100)
C2:
PF077039=A2M_N_2=PD(26.2=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGGCCAAGGGAATCATCA
R:
TGTGACAGATCAGCTTCAGGC
Band lengths:
207-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]