GgaEX1004312 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C544]
Coordinates
chr1:75693585-75709925:+
Coord C1 exon
chr1:75693585-75693648
Coord A exon
chr1:75694102-75694244
Coord C2 exon
chr1:75709857-75709925
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCTCTTGTTTTGTTTGCTAGTCA
3' ss Score
6.04
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GTGATGGCCAAGGGAATCATCAAGAAAGCAGGCACCAGCATTCTGGATTTGGACAAGGAAAGTG
Seq A exon
TCAATGGGGTCTTCATACTACAGCTGCCTGTGGAAGCTGACTTTGCTCCTGTGGCCCAAGTGCTTGTCTATACTGTTACCCCCAGCAGGGAGGTGATTGCAGATTCAACAAAGTTCAACATAGAAAAATGTTTCAACAATAAG
Seq C2 exon
CTGGCACACCACCAAGTTATTGAGCGTACGGAGTTCAGTACCAACCATGTCTTAGTGTATGTGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022964_MULTIEX2-5/20=4-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(14.3=100)
A:
PF077039=A2M_N_2=FE(32.0=100)
C2:
PF076779=A2M_recep=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGGCCAAGGGAATCATCA
R:
TTCCACATACACTAAGACATGGTTGG
Band lengths:
130-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]