GgaEX1005399 @ galGal3
Exon Skipping
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7977017-7978601:-
Coord C1 exon
chr18:7978482-7978601
Coord A exon
chr18:7977412-7977613
Coord C2 exon
chr18:7977017-7977186
Length
202 bp
Sequences
Splice sites
3' ss Seq
GTTCCTCTCTTCCATCACAGATT
3' ss Score
10.14
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCTTGTTCTCCGACCTTGACACCCATTCCCATCTGGGTGTGATTTCTTATGGCGTTTCCATGACGACGCTGGAGGATGTCTACCTGAAGCTGGAAGTTGAGGCAGAGATTGACCAAGCAG
Seq A exon
ATTACAGTGTGTTCAGCTCCCAGCAGGCGCAGGAGGAGACGGACATGAGCTCGCAGGATGACATGGAGCAGAGCCTGCTGATGCTGCCAGAGGCCAGGTCAGCCCCACAGAGCAACACAGCCCTGTGGAAGAAGCAGGTTTCCACCATAGCCAAGCTGCACTTCCTCAGCCTCAAGCGTGAGAGCAAATGTGTCAGAGTGAT
Seq C2 exon
GCTGTTGCTTTTCCTGATCTTTCTCGTCGTTCAAATTCTGTTTTTCCTCACACACCACTACATCAAACATTCACTTGCTCCACTCAGGCTCTCCCCAGAGCTGTACCTGCTGAGGCCCGGGGAGGAGCACCACAAGTATAGGAGTCGGCTGCTGCTGCAGAACTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(1.4=7.4)
C2:
PF126982=ABC2_membrane_3=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCGACCTTGACACCCATT
R:
CTGTGGAGTTCTGCAGCAGC
Band lengths:
284-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]