BtaEX6091118 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61978118-61982376:+
Coord C1 exon
chr19:61978118-61978237
Coord A exon
chr19:61979569-61979767
Coord C2 exon
chr19:61982210-61982376
Length
199 bp
Sequences
Splice sites
3' ss Seq
AGTTTATCACATGGTTACAGATC
3' ss Score
4.26
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ATCTTTGCAGAGACCTTGAAAACTCTTCTGACCAGGGCATAATGAATTTTGGTGTTTCCATGACAACTCTAAATGAAGTATTCTTGAACCTAAAAGGCAGATCAGCAATTAATGGGCCAG
Seq A exon
ATCCCGGTGTCGGGGGCCTGGCGGAAATCGACGTGACCCGAGACCCTGGAGCGGAGTCTGAAGCCCAGCAGGCTCTTGGTTCCCTTCCGGAAGTGAAACAGGCCGCCAGCTCTGCAGCTCTGTGGAGACGCCAAGTCTGTGCGGTGGCGAGACTCCGCTTCTTAAAGCTGAGGAATGAGAGGAAGATTTTCCTGTCCTT
Seq C2 exon
GTTAGTGGTGTTCGGAATTGCCTTAATCCCCACTGTCTGCGAGAAGATCGTGTATTCAGTGTATTTTCATGATCATCGCTGGGAGTTTTCACCCGGAATGTACTTCCGTTCTCTGGAACAGCTCCCTCAACCTCCTCTGACCAACCTGTTGATCATCAACAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.149 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(7.9=43.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTCTTCTGACCAGGGCA
R:
TTGGTCAGAGGAGGTTGAGGG
Band lengths:
246-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]