HsaEX6024478 @ hg38
Exon Skipping
Gene
ENSG00000154263 | ABCA10
Description
ATP binding cassette subfamily A member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr17:69185477-69190477:-
Coord C1 exon
chr17:69190358-69190477
Coord A exon
chr17:69187681-69187879
Coord C2 exon
chr17:69185477-69185643
Length
199 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTACATGATTGTAGATT
3' ss Score
5.46
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
Exon sequences
Seq C1 exon
ATCTTTACAGTGACCTTGATAAGTGTTCTGACCAGGGCATAAGGAATTATGCTGTTTCAGTGACATCTCTGAATGAAGTATTCTTGAACCTAGAAGGAAAATCAGCAATTGATGAACCAG
Seq A exon
ATTTTGACATTGGGAAACAAGAGAAAATACATGTGACAAGAAATACTGGAGATGAGTCTGAAATGGAACAGGTTCTTTGTTCTCTTCCTGAAACAAGAAAGGCTGTCAGTAGTGCAGCTCTCTGGAGACGACAAATCTATGCAGTGGCAACACTTCGCTTCTTAAAGTTAAGGCGTGAAAGGAGAGCTCTTTTGTGTTT
Seq C2 exon
GTTACTAGTACTTGGAATTGCTTTTATCCCCATCATTCTAGAGAAGATAATGTATAAAGTAACTCGTGAAACTCATTGTTGGGAGTTTTCACCCAGTATGTATTTCCTTTCTCTGGAACAAATCCCGAAGACGCCTCTTACCAGCCTGTTAATCGTTAATAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154263-'28-39,'28-37,31-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(0.8=4.5)
C2:
PF126982=ABC2_membrane_3=FE(15.5=100)
Main Skipping Isoform:
ENST00000269081fB8330
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCTGACCAGGGCATAAGG
R:
TAACAGGCTGGTAAGAGGCGT
Band lengths:
249-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains