RnoEX0004890 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98604648-98608172:-
Coord C1 exon
chr10:98608053-98608172
Coord A exon
chr10:98606383-98606584
Coord C2 exon
chr10:98604648-98604817
Length
202 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTATTGGCAAATAGATT
3' ss Score
4.51
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GCTTGTTTTCTGCTCTAGACATTCATTCAAACCTGGGTGTAATTTCTTATGGTGTTTCCATGACGACATTGGAAGACGTGTTTTTAAAGCTAGAAGTTGAAGCAGAAATTGACCAAGCAG
Seq A exon
ATTATAGTGTATTTACCCAGCAGCCACGGGAGGAAGAAACAGATTCAAAGTCTTTTGATGAAATGGAACAGAGTTTACTTATTCTCTCTGAAACCAAAGCTTCTCTAGTGAGCACCATGAGTCTCTGGAAGCAGCAAGTATCTACAATAGCAAAGTTTCATTTCCTCTCACTGAAGCGAGAAAGCAAATCAGTGCGCTCTGT
Seq C2 exon
GTTGCTTCTGCTTTTAATTTTTTTTGCAGTTCAGATTTTTATGTTTTTGGTCCATCATTCTTTTAAAAATGCTGTGGTTCCCATCAAGCTCGTTCCAGACTTGTATTTTCTAAAACCTGGAGATAAACCTCATAAATACAAAACAAGCCTGCTGCTTCAAAATTCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'21-25,'21-23,22-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.074 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(1.4=7.4)
C2:
PF126982=ABC2_membrane_3=FE(15.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTTTTCTGCTCTAGACATTCA
R:
CAGTAGAATTTTGAAGCAGCAGGC
Band lengths:
290-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]