RnoEX6050355 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98606383-98609695:-
Coord C1 exon
chr10:98609556-98609695
Coord A exon
chr10:98608053-98608172
Coord C2 exon
chr10:98606383-98606584
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTATTTCTCCTTTCTTTCAGGCT
3' ss Score
10.88
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CATGTATATAGACAGGTACTGTGCCACAGAGTCGCTCTCGTCGCTGGTTAGACAGCACATCCCTGCGGCCGCTCTGCTGCAGCAGAATGACCAGCAGATTGTCTATAGCTTGCCCTTCAAAGACATGGACAAATTTTCAG
Seq A exon
GCTTGTTTTCTGCTCTAGACATTCATTCAAACCTGGGTGTAATTTCTTATGGTGTTTCCATGACGACATTGGAAGACGTGTTTTTAAAGCTAGAAGTTGAAGCAGAAATTGACCAAGCAG
Seq C2 exon
ATTATAGTGTATTTACCCAGCAGCCACGGGAGGAAGAAACAGATTCAAAGTCTTTTGATGAAATGGAACAGAGTTTACTTATTCTCTCTGAAACCAAAGCTTCTCTAGTGAGCACCATGAGTCTCTGGAAGCAGCAAGTATCTACAATAGCAAAGTTTCATTTCCTCTCACTGAAGCGAGAAAGCAAATCAGTGCGCTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(1.4=7.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGAATGACCAGCAGAT
R:
CGCACTGATTTGCTTTCTCGC
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]