BtaEX6091119 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006937 | ABCA10
Description
ATP-binding cassette, sub-family A (ABC1), member 10 [Source:HGNC Symbol;Acc:HGNC:30]
Coordinates
chr19:61977232-61979767:+
Coord C1 exon
chr19:61977232-61977371
Coord A exon
chr19:61978118-61978237
Coord C2 exon
chr19:61979569-61979767
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTGTTACTTTGCTTTTTAGATC
3' ss Score
9.92
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
TTTACACAGGAATGAAAGGTGCAATACGGAGAGAATCACATCCCTCATCACACAGCACATCTCAGATGCCAAGTTAACAGCAGAAAATGAAGAAAAACTTGTGTATACTTTGCCCCTGGAGAGAACAGACAAGTTTCCAG
Seq A exon
ATCTTTGCAGAGACCTTGAAAACTCTTCTGACCAGGGCATAATGAATTTTGGTGTTTCCATGACAACTCTAAATGAAGTATTCTTGAACCTAAAAGGCAGATCAGCAATTAATGGGCCAG
Seq C2 exon
ATCCCGGTGTCGGGGGCCTGGCGGAAATCGACGTGACCCGAGACCCTGGAGCGGAGTCTGAAGCCCAGCAGGCTCTTGGTTCCCTTCCGGAAGTGAAACAGGCCGCCAGCTCTGCAGCTCTGTGGAGACGCCAAGTCTGTGCGGTGGCGAGACTCCGCTTCTTAAAGCTGAGGAATGAGAGGAAGATTTTCCTGTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006937-'15-20,'15-19,17-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.149
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACATCCCTCATCACACAGC
R:
GACTTGGCGTCTCCACAGAG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]