RnoEX6050307 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98446816-98450265:-
Coord C1 exon
chr10:98450126-98450265
Coord A exon
chr10:98448242-98448361
Coord C2 exon
chr10:98446816-98447011
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTCCTACTTTTAGACC
3' ss Score
8.32
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
TTTGCATTTGAATGAAACTTGTGATCCAGAGAGTATAACATCACTGGTCAAAAAGCACATACCGGACGCCAGACTGACTGCACAAAGCGACGAACAGCTTGTCTATATCTTGCCCCTGGAAAGGACAAACAAGTTTCCAG
Seq A exon
ACCTTTACAGGGACCTTGACAGATGCTCTAACCACGGCATTGAGGATTATGATGTTTCCATGACAACCCTGAATGAGGTGTTCCTGAAGTTAGAGGGGAAGTCCATGGCTGAGGAACCGG
Seq C2 exon
ACGCTGGAGTTTGTGGTCGCTTGCTAAGCGATGGGGCAAAAGATGTGGAAAGCCTTGTTGAGCTGGAGCGAGTGTTGCCTCTCGATTCATCAGGGAGCTCAGTGAGCGGCATGGCGCTGTGGAGGCAGCAGCTCTGCGCAGTCGCGAAGGTCCGCTTCCTCAAGCTCAAGAACGAACGAAGAAGTCTGATGACCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAAGCACATACCGGACGC
R:
GCTTGAGGAAGCGGACCTTC
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]