GgaEX1004147 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSC3]
Coordinates
chr18:8216857-8217919:-
Coord C1 exon
chr18:8217780-8217919
Coord A exon
chr18:8217559-8217678
Coord C2 exon
chr18:8216857-8217016
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGGTTCACTCTGTCACACAGATC
3' ss Score
6.4
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GATATGCATAAATGATCAGTGTGACCCTGGGCTTGCATCATCCCTGGTCAGGCGGTACATCCCCAATGCTGTGATCAAAGGGCAGGATGGGGATGAGCTGTGTTACGTGCTGCCTCTGGAAAACACCAAGAGCTTCCCAG
Seq A exon
ATCTGCTTGGCCACCTTGACAGCGGCCTCGTGCTGGGGGTTGTTCACTACGAGGTCAGCAGGACAACCCTGGCAGATGCTCTCCTACAGCTGGAAGGCAGGGAAGCTATTGATCATAAAG
Seq C2 exon
GTGCAGAAAACCTGAAGGAGAGTGACCAGAGCTTCCTGGGCTTTTCTGAACCAGCACACATAGCAGCAAGCGGCATGGAGCTCTGGAGGCAGCAGGTCCTCGCCGTGGCCAGAGTTCGTTTCTACAGACTGAGGCATGATGGAAAGCTTCTCCGGTCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021395-'15-16,'15-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTACATCCCCAATGCTGTG
R:
GGACCGGAGAAGCTTTCCATC
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]