GgaEX1004147 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7952348-7953412:-
Coord C1 exon
chr18:7953271-7953412
Coord A exon
chr18:7953050-7953169
Coord C2 exon
chr18:7952348-7952507
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGGTTCACTCTGTCACACAGATC
3' ss Score
6.4
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AGGATATGCATAAATGATCAGTGTGACCCTGGGCTTGCATCATCCCTGGTCAGGCGGTACATCCCCAATGCTGTGATCAAAGGGCAGGATGGGGATGAGCTGTGTTACGTGCTGCCTCTGGAAAACACCAAGAGCTTCCCAG
Seq A exon
ATCTGCTTGGCCACCTTGACAGCGGCCTCGTGCTGGGGGTTGTTCACTACGAGGTCAGCAGGACAACCCTGGCAGATGCTCTCCTACAGCTGGAAGGCAGGGAAGCTATTGATCATAAAG
Seq C2 exon
GTGCAGAAAACCTGAAGGAGAGTGACCAGAGCTTCCTGGGCTTTTCTGAACCAGCACACATAGCAGCAAGCGGCATGGAGCTCTGGAGGCAGCAGGTCCTCGCCGTGGCCAGAGTTCGTTTCTACAGACTGAGGCATGATGGAAAGCTTCTCCGGTCCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021393-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTACATCCCCAATGCTGTG
R:
GGACCGGAGAAGCTTTCCATC
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]