RnoEX6050331 @ rn6
Exon Skipping
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98513618-98517761:-
Coord C1 exon
chr10:98517622-98517761
Coord A exon
chr10:98514916-98515032
Coord C2 exon
chr10:98513618-98513801
Length
117 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTCTGTTGGTTTAAGAGT
3' ss Score
5.7
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
TTTGTTCATGAATGAAACGTGCGATTCAGAGCAGTTAACATCCTTCATCAATCACCACATCCCCGGTGCTAAACTAAAAGCAAAAACCAAAGAAAAGCTTGTGTACACTTTGCCACTGGAAAAGACAAGCAAGTTCCCAG
Seq A exon
AGTTCTTCAGTGATCTCGATAAATATTCTGGCCAGGGCTTGATGAATTATGAAGTCTCCATGTCAACTCTGAATGAAGTCTTCATGAACCTGGAAGGAGAACCAAGTACCACACAGG
Seq C2 exon
ACTTTGAGAAAGGGGAGACCCTCACAGACTCTGACAGCTTAAATGAAATGGAGGTGGCTCCCCCTTCCCTCTCTAAAGCCCAGAAGACCATGAGCGCTATGAGCCTGTGGAGAATGCAGGTCTGTGCCATAGCACGGCTTCGCGTCCTAAAACTACGGCGAGAGAGGAAAGCATTTCTAACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890-'21-24,'21-22,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.280
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(1.4=8.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAATCACCACATCCCCGG
R:
GCCGTAGTTTTAGGACGCGAA
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]