MmuEX6090880 @ mm10
Exon Skipping
Gene
ENSMUSG00000044749 | Abca6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:MGI Symbol;Acc:MGI:1923434]
Coordinates
chr11:110212191-110216655:-
Coord C1 exon
chr11:110216516-110216655
Coord A exon
chr11:110214112-110214228
Coord C2 exon
chr11:110212191-110212374
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTGTTGGCTTAGAGT
3' ss Score
7.26
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
TTTGTTTATGGATGAAACGTGTGATTCAGAGCGGCTAACATCCTTCATCAACCATCACATCCCATATGCTAAATTAAAGGCCAAAACCAAAGAAAAGCTTGTGTACATTTTGCCACTGGAAAGGACAAGCGAATTCCCAG
Seq A exon
AGTTCTTCAGTGATCTCGATAAATATTCTGGCCAGGGCTTGATGAGTTATGAAGTTTCCATGTCAACTCTCAATGATGTCTTCCTGAACCTGGAAGGAGAACCAAGTACCAAACAGG
Seq C2 exon
ACTTTGAGAAAAGAGAAACAGCAACAGACTCAGAAAGCTTAAATGACATGGAGGTGGCTTACCCTTCTCTCTCTCAAGTTCAGGAGACTGTGAGCACCATGAGCCTTTGGAGAATGCAAGTCTGTGCTATAGCACGGCTTCGCATCTTAAAGCTAAAACGAGAGAGAAAAGCATTTTTGATCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044749-'20-23,'20-22,21-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.050 C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(1.4=8.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGATTCAGAGCGGCTAA
R:
AGCACAGACTTGCATTCTCCA
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types