GgaEX1005398 @ galGal3
Exon Skipping
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7977412-7980176:-
Coord C1 exon
chr18:7980037-7980176
Coord A exon
chr18:7978482-7978601
Coord C2 exon
chr18:7977412-7977613
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGCTCCCTCCTGCCTGCAGGCT
3' ss Score
10.78
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
CATGCATATTGATGCCTACTGCAACACGGAAGCCACGACCTCACTGATCAGGCAGCATATCCCCGCAGCCAGCCTGATCCAGGAGAACACCCAGCAGCTCGTCTACACACTGCCACTCCGGGACATGGACAAGTTTGCAG
Seq A exon
GCTTGTTCTCCGACCTTGACACCCATTCCCATCTGGGTGTGATTTCTTATGGCGTTTCCATGACGACGCTGGAGGATGTCTACCTGAAGCTGGAAGTTGAGGCAGAGATTGACCAAGCAG
Seq C2 exon
ATTACAGTGTGTTCAGCTCCCAGCAGGCGCAGGAGGAGACGGACATGAGCTCGCAGGATGACATGGAGCAGAGCCTGCTGATGCTGCCAGAGGCCAGGTCAGCCCCACAGAGCAACACAGCCCTGTGGAAGAAGCAGGTTTCCACCATAGCCAAGCTGCACTTCCTCAGCCTCAAGCGTGAGAGCAAATGTGTCAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(1.4=7.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCTCGTCTACACACTG
R:
TGACACATTTGCTCTCACGCT
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]