BtaEX0001702 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61896505-61900598:+
Coord C1 exon
chr19:61896505-61896644
Coord A exon
chr19:61897695-61897814
Coord C2 exon
chr19:61900397-61900598
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTTTCATTTTTTCCTTTTAGGCT
3' ss Score
12.27
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CATGTACATAGACAGATACTGTGCCACAGAATCTCTTTCTTCTCTGGTTAAACAACATATACCTGCGGCCACTTTGTTGCAACAGAATGAGCAGCAACTTGTGTACAGCTTGCCTTTCAAGGACATGGACAAATTTTCAG
Seq A exon
GCTTATTTTCTGCTCTAGACAGTCATTCAGACTTAGGTGTTATTTCTTATGGTGTCTCCATGACGACTTTGGAAGATGTATTCTTAAAGCTAGAAGTTGAAGCGGAAACTGACCAAGCAG
Seq C2 exon
ATTACAGCGTGTTTTCTCAGCAGCCGCAAGAGGAAGAGTTGGATTCAAAATCCTTCGACGAGATGGAACAGAGCTTGCTTATTCTCTCCGAAAGTAAGGCTGCTCTGGTGAGCGCCAAGGGCCTCTGGACGCAGCAGGTGTTTACCATCGCCAGGTTTCACTTCCTCAACTTGAGACGCGAAAGCAAGTCCCTGAGATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(1.4=7.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACATATACCTGCGGCCAC
R:
AACCTGGCGATGGTAAACACC
Band lengths:
246-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development