GgaEX1005398 @ galGal4
Exon Skipping
Gene
ENSGALG00000004333 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr18:8241921-8244685:-
Coord C1 exon
chr18:8244546-8244685
Coord A exon
chr18:8242991-8243110
Coord C2 exon
chr18:8241921-8242122
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGCTCCCTCCTGCCTGCAGGCT
3' ss Score
10.78
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
CATGCATATTGATGCCTACTGCAACACGGAAGCCACGACCTCACTGATCAGGCAGCATATCCCCGCAGCCAGCCTGATCCAGGAGAACACCCAGCAGCTCGTCTACACACTGCCACTCCGGGACATGGACAAGTTTGCAG
Seq A exon
GCTTGTTCTCCGACCTTGACACCCATTCCCATCTGGGTGTGATTTCTTATGGCGTTTCCATGACGACGCTGGAGGATGTCTACCTGAAGCTGGAAGTTGAGGCAGAGATTGACCAAGCAG
Seq C2 exon
ATTACAGTGTGTTCAGCTCCCAGCAGGCGCAGGAGGAGACGGACATGAGCTCGCAGGATGACATGGAGCAGAGCCTGCTGATGCTGCCAGAGGCCAGGTCAGCCCCACAGAGCAACACAGCCCTGTGGAAGAAGCAGGTTTCCACCATAGCCAAGCTGCACTTCCTCAGCCTCAAGCGTGAGAGCAAATGTGTCAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'17-20,'17-19,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(1.4=7.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCTCGTCTACACACTG
R:
TGACACATTTGCTCTCACGCT
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]