MmuEX6090912 @ mm10
Exon Skipping
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110298036-110301552:-
Coord C1 exon
chr11:110301413-110301552
Coord A exon
chr11:110299891-110300010
Coord C2 exon
chr11:110298036-110298237
Length
120 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTGCTTTCTTTTAGGCT
3' ss Score
11.82
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CATGTATATAGACAGATACTGTGCCACAGAGTCACTGTCGTCGCTGGTTAGGCAGCACATACCCGCAGCCGCGCTACTGCAGCAGAATGACCAGCAGCTCGTGTACAGCCTGCCTTTCAAAGACATGGACAAATTTTCAG
Seq A exon
GCTTGTTTTCTGCTCTAGACATTCATTCAAACCTGGGTGTTATTTCTTATGGTGTTTCCATGACAACATTGGAAGATGTATTCTTAAAGCTAGAAGTTGAAGCAGAAATTGACCAAGCAG
Seq C2 exon
ACTATAGTGTATTTACACAGCAGCCGCGGGAGGAAGAAACAGATTCAAAATCCTTTGATGAAATGGAACAGAGTTTACTTATTCTCTCTGAAACGAAAGCTTCTTCAGTGAGCACCATGAGCCTCTGGAAGCAGCAAGTGTCTACGATTGCAAAGTTTCATTTCCTCTCATTGAAACGAGAAAGCAAATCAGTGCGCGCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-'28-25,'28-24,29-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(1.4=7.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACTGTCGTCGCTGGTTAG
R:
GACACTTGCTGCTTCCAGAGG
Band lengths:
252-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types