RnoEX0004968 @ rn6
Exon Skipping
Gene
ENSRNOG00000004147 | Abca8a
Description
ATP-binding cassette, subfamily A (ABC1), member 8a [Source:RGD Symbol;Acc:1307333]
Coordinates
chr10:98324582-98363605:-
Coord C1 exon
chr10:98363466-98363605
Coord A exon
chr10:98360440-98360556
Coord C2 exon
chr10:98324582-98324701
Length
117 bp
Sequences
Splice sites
3' ss Seq
TTTAAAAAATTATTTGTTAGATC
3' ss Score
4.12
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTTGCAGCTGAGTGAAACGTGTGTGCACGAAAGAATAACATCGCTCGTCAAACAGCACATCCCCGATTCCAAGTTGTCGGCAGAAAGCGAAGGGAAACTGAATTACATATTACCCCTGGAAAGGACAAACAAATTTCCAG
Seq A exon
ATCTTTATAGGGATCTCGAGAGATGCCCCGACCTGGGAATTGAGAACTATGGCGTTTCTGTAACAACTCTGACTGAGGTCTTTCTGAAACTGGAAGGAAAATCAGCAATTGATTCAG
Seq C2 exon
GCAGGCGATCCAGGCCACCTTCGCAAACACAGAGAGGGGCGCCCTCCTGACCACCCATTACATGGCAGAGGCTGAGGCTGTGTGTGACCGCGTGGCCATCATGGTGTCTGGGAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004147_MULTIEX1-17/37=16-35
Average complexity
C3
Mappability confidence:
94%=95=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000005665fB320
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGCTGAGTGAAACGTGT
R:
CTTCCCAGACACCATGATGGC
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]