MmuEX6090817 @ mm10
Exon Skipping
Gene
ENSMUSG00000041828 | Abca8a
Description
ATP-binding cassette, sub-family A (ABC1), member 8a [Source:MGI Symbol;Acc:MGI:2386846]
Coordinates
chr11:110063022-110068164:-
Coord C1 exon
chr11:110068025-110068164
Coord A exon
chr11:110065165-110065284
Coord C2 exon
chr11:110063022-110063220
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTTAAAAAAGTGTTCGTTAGATC
3' ss Score
-1.5
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CTTGCAGCTGAGTGAAACGTGTGTGCATGAAAGAATAACATCACTTGTCAAACAGCACATCCCCGATTCCAAGTTGTCAGCAGAAAGCGAAGGGAAACTGAGCTACATATTACCCCTGGAAAGAACAAACAAGTTTCCAG
Seq A exon
ATCTTTATAGGGATCTCGAGAGAAGTCCAGACCTGGGAATTGAGAACTATGGCGTTTCTATAACAACACTGACTGAGGTCTTTCTGAAACTGGAAGGAAAATCATCTATTGACCAATCAG
Seq C2 exon
ATATTGGTATGACAGAAGATGTACAAGCTGGAGGGGCAAGGAGCCCAGAGAGGTTTGCTGAAGTAGAACAACTTGTCTCTTTACTTAATGGGAGGTGTAAGATGAAGGGGGGCATGGCTCTATGGTGGCAGCAACTCTGTGCAGTGACCAGGCTTCGCTTCTTGAAGTTAAAGCATGAAAGGAAATCCATCGTTATTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041828-'24-27,'24-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(0.8=4.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGCACATCCCCGATTCC
R:
CCTGGTCACTGCACAGAGTTG
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types