BtaEX6091171 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62123081-62126686:+
Coord C1 exon
chr19:62123081-62123220
Coord A exon
chr19:62124853-62124972
Coord C2 exon
chr19:62126488-62126686
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATGCCTATTTTTAGACC
3' ss Score
7.7
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTTGCATCTGAATGAGACGTGTGATCCAGACAGTGTAACATCGATTGTTAAACACCACGTCCCTGATGCCAAATTAACAGCCCAAAGTGAAGAAAAGCTGGAGTATATTCTGCCTATGGAAAGGACAAACAAATTTCCAG
Seq A exon
ACCTCTACAGGGATCTTGAAAGCTGTTCCAACCAGGGCATTGAGAATTATGGTGTTTCCATGACAACACTGAATGAAGTGTTCTTGAAATTAGAAGGAAAATCAGCTTTTGATGAATCAG
Seq C2 exon
GCCCTGCAGTTTCGGAGCAGTTACAGAGTGGCAGAACCAACGACACAGGCAGCCTTGCTGAGCCGGAACAGGTCGTGTCGTCCTTCAGTGAAGCAAGCAGCACGGTCGGCGGCCTGGCCCTCTGGAGGCAGCAGCTCTGTGCAGTAGCAAAAGTCCGCTTCCTCAAGTTAAAGAGTGAAAAGAGAGCCCTGCTGGCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'24-28,'24-27,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.299
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGTCCCTGATGCCAAATT
R:
TTGAGGAAGCGGACTTTTGCT
Band lengths:
252-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]