GgaEX6016360 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8195021-8196087:-
Coord C1 exon
chr18:8195948-8196087
Coord A exon
chr18:8195335-8195451
Coord C2 exon
chr18:8195021-8195213
Length
117 bp
Sequences
Splice sites
3' ss Seq
ACCATACCTCTGTCACACAGATC
3' ss Score
7.28
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
GATCCATGTCAGTGATTCTTGTGACGTAGAGAATGTGACGTGTCTGGTTAAGCAGTATGTCCCCAAAGTCATATTCTCGGGACATGGTCAATATGAGCTGAGATATAAACTGCCATTAGAAAACGTGAATAAATTCCCAG
Seq A exon
ATCTGTTCCGGGGCCTTGACAACTGCTCTGACCTGGGAATCATCAATTATGGAGTCAGTATGACAACCCTGGAGGATGTCTTCCTGAGACTGGAAGAAGCTGCAGTGGATCCAGAAG
Seq C2 exon
ATGAGCGTGTCCCTGGGGAGTGGGCAGAAGGAGGAGCGCGGAGCCCAGAGGAGATGGAGCAGGGCTCCCTGCTGCTCTCAGACACTGGGAGGATGACACTCAGCAGCTGGGCACTCTGGAGGCAGCAGGTCTCTGCCATGGCATGGGTGCACTTCCTAAAGCTCAAGACCTCAGTGAAGAACCTCCTCTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'18-20,'18-18,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTATGTCCCCAAAGTCA
R:
GAGCTTTAGGAAGTGCACCCA
Band lengths:
254-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]