MmuEX0003027 @ mm10
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109957063-109962720:-
Coord C1 exon
chr11:109962581-109962720
Coord A exon
chr11:109961794-109961913
Coord C2 exon
chr11:109957063-109957258
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGGCTGTGTGTGCCCTTTAGAGC
3' ss Score
8.13
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTTGCAGCTGAAAGAAGTCTGTGTTCCAGAAAACATCACATCGCTTGTTAAACAGCACATCCCTGCAGCCAAGCTATCAGCTGAAGGGGAAGGAAAGCTTCTCTATACATTACCCTTAGAAACAACTTATAGATTTCCAG
Seq A exon
AGCTTTGCCAGAGTCTTGACAGCTGTCCTGGACTGGGAATTGAAAACTATGGTGTTTCCATGACAACTTTGAATGAGGTGTTCCTGAAGCTAGAAGGAAAAGCATCAATTGATGAACCAG
Seq C2 exon
AGGTTGACATCGTGGGAGAAGGACAAACAGAGAGATCTGGGGACACAGAAAGGCTTATGGAGATGGAGCAAACTCTCTCTTCACTTAGGGAAACAGAGAAGACAGACGGCATGGCACTCTGGAGGCAGCAAACCTGTGCGATCGCAAAGGTTCGCCTGTTGAAGTTAAAGCACGAAAGGAAAACACTTTTATCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620_MULTIEX3-10/24=9-11
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.394
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCTGCAGCCAAGCTATC
R:
CGTGCTTTAACTTCAACAGGCG
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types