RnoEX0004939 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98264316-98274649:-
Coord C1 exon
chr10:98274510-98274649
Coord A exon
chr10:98273728-98273847
Coord C2 exon
chr10:98264316-98264514
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGGCTGTGTGTGCCCTTTAGAAC
3' ss Score
8.29
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTTGCAGCTGAAGGAAGTCTGTGTTCCGGAGAACATCACATCACTGGTGAAACAGCACATCCCTGAGGCCAAGCTGTCAGCTGAAAGGGAGAGGACACTTGTCTATACATTACCCTTAGAAACAACCTATAGATTTCCAG
Seq A exon
AACTTTGCCAGAGTCTTGACAGCTGTCCTGGACTGGGAATTGATAGCTATGGTGTTTCCATGACGACTTTGAATGAGGTGTTCCTGAAGCTAGAAGGAAAATCAGCAATTGAAGAACCAG
Seq C2 exon
AGGTTGACATAGTGGGAGAAGGACAAACAGAGAGATCTGGGGACACAGAGAGACTCATGGAGATGGAGCAGACTCTCTCTACACTTACGGAGACGAAGAAGAAGACAGGCAGCTTGGCTCTCTGGAGACAGCAAACCTGTGCAATCGCAAAGGCTCGCTTGTTGAAGTTAAAGCATGAAAGGAAAACACTTCTCTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'22-24,'22-23,23-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGTGAAACAGCACATCCC
R:
CGATTGCACAGGTTTGCTGTC
Band lengths:
245-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]