RnoEX0004889 @ rn6
Exon Skipping
Gene
ENSRNOG00000004378 | Abca5
Description
ATP binding cassette subfamily A member 5 [Source:RGD Symbol;Acc:628661]
Coordinates
chr10:98608053-98609960:-
Coord C1 exon
chr10:98609870-98609960
Coord A exon
chr10:98609556-98609695
Coord C2 exon
chr10:98608053-98608172
Length
140 bp
Sequences
Splice sites
3' ss Seq
CCTGGCTTTGACTTTTCTAGCAT
3' ss Score
8.08
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
ACAGGAAAGCTGTCATATCACAAGGAATGCTGAAATGTGTTGGTTCTTCAATTTTCCTGAAAAGTAAATGGGGAATCGGCTACCGTCTGAG
Seq A exon
CATGTATATAGACAGGTACTGTGCCACAGAGTCGCTCTCGTCGCTGGTTAGACAGCACATCCCTGCGGCCGCTCTGCTGCAGCAGAATGACCAGCAGATTGTCTATAGCTTGCCCTTCAAAGACATGGACAAATTTTCAG
Seq C2 exon
GCTTGTTTTCTGCTCTAGACATTCATTCAAACCTGGGTGTAATTTCTTATGGTGTTTCCATGACGACATTGGAAGACGTGTTTTTAAAGCTAGAAGTTGAAGCAGAAATTGACCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004378-'19-22,'19-21,20-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAAAGCTGTCATATCACAAGG
R:
TGCTTGGTCAATTTCTGCTTCA
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]