MmuEX6090911 @ mm10
Exon Skipping
Gene
ENSMUSG00000018800 | Abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:MGI Symbol;Acc:MGI:2386607]
Coordinates
chr11:110299891-110301821:-
Coord C1 exon
chr11:110301731-110301821
Coord A exon
chr11:110301413-110301552
Coord C2 exon
chr11:110299891-110300010
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGAATTTTGGCTTTTCCTAGCAT
3' ss Score
5.27
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
ACAGGAAAGCTGTCATATCACAAGGAATGCTGAAGTGTGTTGGTTCTTCAATTTTCCTAAAGAGTAAATGGGGAATCGGCTACCGCCTGAG
Seq A exon
CATGTATATAGACAGATACTGTGCCACAGAGTCACTGTCGTCGCTGGTTAGGCAGCACATACCCGCAGCCGCGCTACTGCAGCAGAATGACCAGCAGCTCGTGTACAGCCTGCCTTTCAAAGACATGGACAAATTTTCAG
Seq C2 exon
GCTTGTTTTCTGCTCTAGACATTCATTCAAACCTGGGTGTTATTTCTTATGGTGTTTCCATGACAACATTGGAAGATGTATTCTTAAAGCTAGAAGTTGAAGCAGAAATTGACCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018800-'27-24,'27-23,28-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAAAGCTGTCATATCACAAGG
R:
TGCTTGGTCAATTTCTGCTTCA
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types