BtaEX6091095 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61895979-61897814:+
Coord C1 exon
chr19:61895979-61896069
Coord A exon
chr19:61896505-61896644
Coord C2 exon
chr19:61897695-61897814
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGGGTTTTCTCCAGCAT
3' ss Score
7.63
5' ss Seq
CAGGTATTC
5' ss Score
6.49
Exon sequences
Seq C1 exon
ATAGGAAGGCTGTCATATCACAAGGAATGTTAAAATGTGTTGGTTCTTCAATTTTTCTCAAAAGCAAATGGGGAATTGGCTACCGGCTGAG
Seq A exon
CATGTACATAGACAGATACTGTGCCACAGAATCTCTTTCTTCTCTGGTTAAACAACATATACCTGCGGCCACTTTGTTGCAACAGAATGAGCAGCAACTTGTGTACAGCTTGCCTTTCAAGGACATGGACAAATTTTCAG
Seq C2 exon
GCTTATTTTCTGCTCTAGACAGTCATTCAGACTTAGGTGTTATTTCTTATGGTGTCTCCATGACGACTTTGGAAGATGTATTCTTAAAGCTAGAAGTTGAAGCGGAAACTGACCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747-'17-18,'17-16,18-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAAGGCTGTCATATCACAAGG
R:
CTGCTTGGTCAGTTTCCGCTT
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]