GgaEX1005397 @ galGal3
Exon Skipping
Gene
ENSGALG00000004333 | E1BY40_CHICK
Description
NA
Coordinates
chr18:7978482-7980448:-
Coord C1 exon
chr18:7980358-7980448
Coord A exon
chr18:7980037-7980176
Coord C2 exon
chr18:7978482-7978601
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTGCATTTCTGCAGCAT
3' ss Score
8.19
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATCGTAAAGCTGTGATTTCTCAAGGGATGCTGAAATGCCTTGGATCTTCTCTCTTTCTGAAAAGCAAATGGGGAATTGGCTACCGCTTGAG
Seq A exon
CATGCATATTGATGCCTACTGCAACACGGAAGCCACGACCTCACTGATCAGGCAGCATATCCCCGCAGCCAGCCTGATCCAGGAGAACACCCAGCAGCTCGTCTACACACTGCCACTCCGGGACATGGACAAGTTTGCAG
Seq C2 exon
GCTTGTTCTCCGACCTTGACACCCATTCCCATCTGGGTGTGATTTCTTATGGCGTTTCCATGACGACGCTGGAGGATGTCTACCTGAAGCTGGAAGTTGAGGCAGAGATTGACCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004333-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAAAGCTGTGATTTCTCAAGGG
R:
CTGCTTGGTCAATCTCTGCCT
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]