BtaEX6091094 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61897695-61901361:+
Coord C1 exon
chr19:61897695-61897814
Coord A exon
chr19:61900397-61900598
Coord C2 exon
chr19:61901192-61901361
Length
202 bp
Sequences
Splice sites
3' ss Seq
CCTTCTGTTTCGGCACATAGATT
3' ss Score
6.89
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
Exon sequences
Seq C1 exon
GCTTATTTTCTGCTCTAGACAGTCATTCAGACTTAGGTGTTATTTCTTATGGTGTCTCCATGACGACTTTGGAAGATGTATTCTTAAAGCTAGAAGTTGAAGCGGAAACTGACCAAGCAG
Seq A exon
ATTACAGCGTGTTTTCTCAGCAGCCGCAAGAGGAAGAGTTGGATTCAAAATCCTTCGACGAGATGGAACAGAGCTTGCTTATTCTCTCCGAAAGTAAGGCTGCTCTGGTGAGCGCCAAGGGCCTCTGGACGCAGCAGGTGTTTACCATCGCCAGGTTTCACTTCCTCAACTTGAGACGCGAAAGCAAGTCCCTGAGATCTGT
Seq C2 exon
GTTGCTCTTACTTTTAATATTTTTCACAGTTCAGATTTTCATGTTTTTGGTACATCACTCTTTGAAAAATGCTGTGGTTCCCATCAGACTTGTTCCAGACTTATACTTCCTCAAACCCGGAGATCAACCCGATAAATACAGAACCAGTCTGCTCCTTCAGAACTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747-'19-20,'19-19,24-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(1.4=7.4)
C2:
PF126982=ABC2_membrane_3=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGCTCTAGACAGTCATTCAGAC
R:
CAGTGGAGTTCTGAAGGAGCA
Band lengths:
284-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]