GgaEX6016340 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:7951877-7953169:-
Coord C1 exon
chr18:7953050-7953169
Coord A exon
chr18:7952348-7952507
Coord C2 exon
chr18:7951877-7952046
Length
160 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTGTCATGATGAAGGTG
3' ss Score
2.95
5' ss Seq
CGTGTAAGC
5' ss Score
5.25
Exon sequences
Seq C1 exon
ATCTGCTTGGCCACCTTGACAGCGGCCTCGTGCTGGGGGTTGTTCACTACGAGGTCAGCAGGACAACCCTGGCAGATGCTCTCCTACAGCTGGAAGGCAGGGAAGCTATTGATCATAAAG
Seq A exon
GTGCAGAAAACCTGAAGGAGAGTGACCAGAGCTTCCTGGGCTTTTCTGAACCAGCACACATAGCAGCAAGCGGCATGGAGCTCTGGAGGCAGCAGGTCCTCGCCGTGGCCAGAGTTCGTTTCTACAGACTGAGGCATGATGGAAAGCTTCTCCGGTCCGT
Seq C2 exon
ATTGCTGTTCTTTGGAGTATTTATCATCCAGATGCTCATGGTTTTCTTTGGTTTTGAACTATGGAACAAATCCATCTCAGAACTGACAGCCAGCAAGTATTTTCTTCCTGCTCAGCCTCCCACTCAAACCCAAAGCAAGTCAACAAATCTTCTCATCTTCAATGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021393-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(18.1=60.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCTTGGCCACCTTGACA
R:
TGCTTTGGGTTTGAGTGGGAG
Band lengths:
257-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]