RnoEX6050332 @ rn6
Exon Skipping
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98512413-98515032:-
Coord C1 exon
chr10:98514916-98515032
Coord A exon
chr10:98513618-98513801
Coord C2 exon
chr10:98512413-98512579
Length
184 bp
Sequences
Splice sites
3' ss Seq
ACCCATGTGTGTTCACACAGACT
3' ss Score
7.41
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
AGTTCTTCAGTGATCTCGATAAATATTCTGGCCAGGGCTTGATGAATTATGAAGTCTCCATGTCAACTCTGAATGAAGTCTTCATGAACCTGGAAGGAGAACCAAGTACCACACAGG
Seq A exon
ACTTTGAGAAAGGGGAGACCCTCACAGACTCTGACAGCTTAAATGAAATGGAGGTGGCTCCCCCTTCCCTCTCTAAAGCCCAGAAGACCATGAGCGCTATGAGCCTGTGGAGAATGCAGGTCTGTGCCATAGCACGGCTTCGCGTCCTAAAACTACGGCGAGAGAGGAAAGCATTTCTAACCTT
Seq C2 exon
TCTACCGCTTCTTGGAATTTCATTGATCCCACTGATTACGGAATACATGGCTAATGCTTTGATAGAGGTAAAAACCAACTGGGAATTTAAAACAGACTTGTATTTCCTGTCTCCCGGACAACTCCCTCAGGGCCTGCGAACCAGTCTATTGGTCATCAATAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.280 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(1.4=8.1)
C2:
PF126982=ABC2_membrane_3=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCAGGGCTTGATGAATT
R:
CCAATAGACTGGTTCGCAGGC
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]