BtaEX6091146 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006921 | ABCA6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:HGNC Symbol;Acc:HGNC:36]
Coordinates
chr19:62064762-62067706:+
Coord C1 exon
chr19:62064762-62064878
Coord A exon
chr19:62066359-62066542
Coord C2 exon
chr19:62067540-62067706
Length
184 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGCGCGTGTGTGTAGATT
3' ss Score
7.18
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ACCTCTTCAGTGACCTCGATGAGGATTGCAGCCTGGGTGTGCTGAGTTATGAGGTTTCCACATCAACTCTGAATGAAGTCTTTACGAAACTGGAGGGAAACTCAATGGCTGAGCAAG
Seq A exon
ATTTTGAACAAGTGGAAATGAGCAGGGACACGGGACGGCTGCATGAGATGGATCCACCTTGCCCTCCTGCCCCTGAGACGCAGAAGGCCATGAGCATCGCCGGCCTCTGGAGGCTGCAGTTCTGGGCGATGGCACGGCTCCGTTTCTTACAGTTAAGACGAGGAAAGAAAGGGCTTCTGATCCT
Seq C2 exon
ACTGTTCGTGTTTGGAGTTGCAGTGTTCCCTTTGATTGTGGAAAGCATATTCTATGCCATGTTGAATGAAACCGCTGATTTGGAGTTTAAACCTGAGTTGTATTTCCTCTCTCCGGGACAACTTCCCCAGGGCCCCCGTACCAGCTTATTGATCATCAATAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006921-'24-20,'24-19,26-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.290 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(1.4=8.1)
C2:
PF126982=ABC2_membrane_3=FE(15.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGATGAGGATTGCAGCCTG
R:
CAATAAGCTGGTACGGGGGC
Band lengths:
254-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]