MmuEX6090881 @ mm10
Exon Skipping
Gene
ENSMUSG00000044749 | Abca6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:MGI Symbol;Acc:MGI:1923434]
Coordinates
chr11:110211657-110214228:-
Coord C1 exon
chr11:110214112-110214228
Coord A exon
chr11:110212191-110212374
Coord C2 exon
chr11:110211657-110211823
Length
184 bp
Sequences
Splice sites
3' ss Seq
ATGTATGTGTGTTTATACAGACT
3' ss Score
7.09
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
AGTTCTTCAGTGATCTCGATAAATATTCTGGCCAGGGCTTGATGAGTTATGAAGTTTCCATGTCAACTCTCAATGATGTCTTCCTGAACCTGGAAGGAGAACCAAGTACCAAACAGG
Seq A exon
ACTTTGAGAAAAGAGAAACAGCAACAGACTCAGAAAGCTTAAATGACATGGAGGTGGCTTACCCTTCTCTCTCTCAAGTTCAGGAGACTGTGAGCACCATGAGCCTTTGGAGAATGCAAGTCTGTGCTATAGCACGGCTTCGCATCTTAAAGCTAAAACGAGAGAGAAAAGCATTTTTGATCAT
Seq C2 exon
TCTACTGCTTCTTGGAATTGCTCTGCTCCCACTGGTCATAGAATACGTGGCTAACGCTTTGCTAGAGGTAAAAAACAACTGGGAATTTAAAACAGACTTGTATTTCCTGTCTCCTGGACAACTCCCTCAGGGTCTGCGAACCAGCCTATTGGTCATCAATAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044749-'21-25,'21-23,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.145 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF126982=ABC2_membrane_3=PU(1.4=8.1)
C2:
PF126982=ABC2_membrane_3=FE(15.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGGCCAGGGCTTGATGA
R:
CAATAGGCTGGTTCGCAGACC
Band lengths:
244-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types