RnoEX6050308 @ rn6
Exon Skipping
Gene
ENSRNOG00000059326 | Abca9
Description
ATP binding cassette subfamily A member 9 [Source:RGD Symbol;Acc:1305931]
Coordinates
chr10:98444778-98448361:-
Coord C1 exon
chr10:98448242-98448361
Coord A exon
chr10:98446816-98447011
Coord C2 exon
chr10:98444778-98444944
Length
196 bp
Sequences
Splice sites
3' ss Seq
TGACTGATTTTACGTTTCAGACG
3' ss Score
7.86
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
ACCTTTACAGGGACCTTGACAGATGCTCTAACCACGGCATTGAGGATTATGATGTTTCCATGACAACCCTGAATGAGGTGTTCCTGAAGTTAGAGGGGAAGTCCATGGCTGAGGAACCGG
Seq A exon
ACGCTGGAGTTTGTGGTCGCTTGCTAAGCGATGGGGCAAAAGATGTGGAAAGCCTTGTTGAGCTGGAGCGAGTGTTGCCTCTCGATTCATCAGGGAGCTCAGTGAGCGGCATGGCGCTGTGGAGGCAGCAGCTCTGCGCAGTCGCGAAGGTCCGCTTCCTCAAGCTCAAGAACGAACGAAGAAGTCTGATGACCAT
Seq C2 exon
GTTATTGCTTTTTGGCATTAGCTTTGTGCCCCAACTTTTGGAACATCTAGTCTACAAGGTATACCACAAAAGTTACTCGTGGGGGCTGTCTCCAAGTATGTATTTCCTTTCACCAGGACAGTTACCACAGGATCCTCTGACCCACTTACTGGTCATCAATAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059326-'19-22,'19-20,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(3.6=19.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGATGCTCTAACCACGGC
R:
AGTGGGTCAGAGGATCCTGTG
Band lengths:
249-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]