BtaEX6091170 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006896 | ABCA9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:HGNC Symbol;Acc:HGNC:39]
Coordinates
chr19:62124853-62129363:+
Coord C1 exon
chr19:62124853-62124972
Coord A exon
chr19:62126488-62126686
Coord C2 exon
chr19:62129197-62129363
Length
199 bp
Sequences
Splice sites
3' ss Seq
ACTGGTTTCATCCTTTGTAGGCC
3' ss Score
9.08
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
ACCTCTACAGGGATCTTGAAAGCTGTTCCAACCAGGGCATTGAGAATTATGGTGTTTCCATGACAACACTGAATGAAGTGTTCTTGAAATTAGAAGGAAAATCAGCTTTTGATGAATCAG
Seq A exon
GCCCTGCAGTTTCGGAGCAGTTACAGAGTGGCAGAACCAACGACACAGGCAGCCTTGCTGAGCCGGAACAGGTCGTGTCGTCCTTCAGTGAAGCAAGCAGCACGGTCGGCGGCCTGGCCCTCTGGAGGCAGCAGCTCTGTGCAGTAGCAAAAGTCCGCTTCCTCAAGTTAAAGAGTGAAAAGAGAGCCCTGCTGGCCAT
Seq C2 exon
ATTACTGCTTTTCGGCATCACCTTTGGCCCTCAGCTTTTGGAGCATCTGTCCTATCGGTTACAGCAAAAAAGCTATTCTTGGGGGTTGTCTCCAAACACGTACTTCCTCTCCCCGGGTCAACCACCTCAAGCCCCACTGACCCGCTTACTGGTCGTCAACAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006896-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.299 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAACCAGGGCATTGAGA
R:
CTGTTGACGACCAGTAAGCGG
Band lengths:
258-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]