GgaEX6016361 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NW73]
Coordinates
chr18:8194219-8195451:-
Coord C1 exon
chr18:8195335-8195451
Coord A exon
chr18:8195021-8195213
Coord C2 exon
chr18:8194219-8194385
Length
193 bp
Sequences
Splice sites
3' ss Seq
ACATGGAAAACTCTCTGCAGATG
3' ss Score
5.2
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATCTGTTCCGGGGCCTTGACAACTGCTCTGACCTGGGAATCATCAATTATGGAGTCAGTATGACAACCCTGGAGGATGTCTTCCTGAGACTGGAAGAAGCTGCAGTGGATCCAGAAG
Seq A exon
ATGAGCGTGTCCCTGGGGAGTGGGCAGAAGGAGGAGCGCGGAGCCCAGAGGAGATGGAGCAGGGCTCCCTGCTGCTCTCAGACACTGGGAGGATGACACTCAGCAGCTGGGCACTCTGGAGGCAGCAGGTCTCTGCCATGGCATGGGTGCACTTCCTAAAGCTCAAGACCTCAGTGAAGAACCTCCTCTCCAT
Seq C2 exon
TTTGCTGCTCTATGTGGTTTTCCTGCTCCCCCTGATTTTGCAACTGGTACTGATGACTGTCTGGCAGAGCATGGGTGCCTGGGAGCTGTGCTCGTCGCGGTACTTCCTGCCCCTGCGGACCAGGGCTCATGATGACACCACCAACCTGCTGGTGCTCAACAGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021399-'19-21,'19-20,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(15.4=96.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTCTGACCTGGGAATCA
R:
GCAGGTTGGTGGTGTCATCAT
Band lengths:
245-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]