MmuEX6090795 @ mm10
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109947065-109961913:-
Coord C1 exon
chr11:109961794-109961913
Coord A exon
chr11:109957063-109957258
Coord C2 exon
chr11:109947065-109947184
Length
196 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTCTGTGTTTTGCAGAGG
3' ss Score
10.19
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
AGCTTTGCCAGAGTCTTGACAGCTGTCCTGGACTGGGAATTGAAAACTATGGTGTTTCCATGACAACTTTGAATGAGGTGTTCCTGAAGCTAGAAGGAAAAGCATCAATTGATGAACCAG
Seq A exon
AGGTTGACATCGTGGGAGAAGGACAAACAGAGAGATCTGGGGACACAGAAAGGCTTATGGAGATGGAGCAAACTCTCTCTTCACTTAGGGAAACAGAGAAGACAGACGGCATGGCACTCTGGAGGCAGCAAACCTGTGCGATCGCAAAGGTTCGCCTGTTGAAGTTAAAGCACGAAAGGAAAACACTTTTATCTGT
Seq C2 exon
ATCACTGTGTTCTCAGTGGCTGTAATATTGCTGGCTTTTGATGTGGATGGTACACAGTACTACATCATCTTTTTGATACCACCGTCCACTCTGGTTGGATGCTTGATCTTGTCTTTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620_MULTIEX3-11/24=10-18
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.394 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=FE(14.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCAGAGTCTTGACAGCTG
R:
GCAAAGACAAGATCAAGCATCCA
Band lengths:
234-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types