RnoEX6050281 @ rn6
Exon Skipping
Gene
ENSRNOG00000004040 | Abca8
Description
ATP binding cassette subfamily A member 8 [Source:RGD Symbol;Acc:1307069]
Coordinates
chr10:98263551-98273847:-
Coord C1 exon
chr10:98273728-98273847
Coord A exon
chr10:98264316-98264514
Coord C2 exon
chr10:98263551-98263717
Length
199 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTCTGTGTTTTACAGAGG
3' ss Score
9.61
5' ss Seq
TGTGTGAGC
5' ss Score
2.62
Exon sequences
Seq C1 exon
AACTTTGCCAGAGTCTTGACAGCTGTCCTGGACTGGGAATTGATAGCTATGGTGTTTCCATGACGACTTTGAATGAGGTGTTCCTGAAGCTAGAAGGAAAATCAGCAATTGAAGAACCAG
Seq A exon
AGGTTGACATAGTGGGAGAAGGACAAACAGAGAGATCTGGGGACACAGAGAGACTCATGGAGATGGAGCAGACTCTCTCTACACTTACGGAGACGAAGAAGAAGACAGGCAGCTTGGCTCTCTGGAGACAGCAAACCTGTGCAATCGCAAAGGCTCGCTTGTTGAAGTTAAAGCATGAAAGGAAAACACTTCTCTCTGT
Seq C2 exon
GCTCTTGGTTCTGGGAGTTGCCCTTTGCCCTCTTCTTTTCGAAAGTATCAAGATGAAAATACTTCAGAGCGCTTACACTTGGGATCTTTCCCCACACTCGTACTTCCTTGCCCCTGGACAACAGCCCCACGGCATGCTCACTCAGTTACTGATCATCAATAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004040-'23-26,'23-24,24-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.373 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCCTGGACTGGGAATTG
R:
GTAACTGAGTGAGCATGCCGT
Band lengths:
248-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]