MmuEX6090795 @ mm9
Exon Skipping
Gene
ENSMUSG00000020620 | Abca8b
Description
ATP-binding cassette, sub-family A (ABC1), member 8b [Source:MGI Symbol;Acc:MGI:1351668]
Coordinates
chr11:109816349-109823227:-
Coord C1 exon
chr11:109823108-109823227
Coord A exon
chr11:109818377-109818572
Coord C2 exon
chr11:109816349-109816515
Length
196 bp
Sequences
Splice sites
3' ss Seq
GCCTCCTCTGTGTTTTGCAGAGG
3' ss Score
10.19
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
AGCTTTGCCAGAGTCTTGACAGCTGTCCTGGACTGGGAATTGAAAACTATGGTGTTTCCATGACAACTTTGAATGAGGTGTTCCTGAAGCTAGAAGGAAAAGCATCAATTGATGAACCAG
Seq A exon
AGGTTGACATCGTGGGAGAAGGACAAACAGAGAGATCTGGGGACACAGAAAGGCTTATGGAGATGGAGCAAACTCTCTCTTCACTTAGGGAAACAGAGAAGACAGACGGCATGGCACTCTGGAGGCAGCAAACCTGTGCGATCGCAAAGGTTCGCCTGTTGAAGTTAAAGCACGAAAGGAAAACACTTTTATCTGT
Seq C2 exon
GCTCTTGATACTGGTAGTCGGCATCTGTCCTTTTCTTTTTGAAAATATCTCAACGAAAATACGTCAAAGCTCTTACACTTGGGAACTTTCCCCACACGATTACTTCCTTGCTCCGGGACAACAGCCCCAGGGCATGCTCACTCAGTTATTGATCATTAATAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020620-'20-20,'20-19,21-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.394 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCCTGGACTGGGAATTG
R:
TAACTGAGTGAGCATGCCCTG
Band lengths:
247-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: