MmuEX6090848 @ mm9
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:109997352-110000952:-
Coord C1 exon
chr11:110000833-110000952
Coord A exon
chr11:109999448-109999643
Coord C2 exon
chr11:109997352-109997518
Length
196 bp
Sequences
Splice sites
3' ss Seq
TGGCTGACCTTACGTTTCAGATG
3' ss Score
8.58
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
ACCTTTACCGGGATCTTGATAGATGTTCTAACCAAGGCATTGAGGATTATGGCGTTTCCATGACAACCCTGAATGAGGTGTTCCTGAAGTTAGAAGGGAAGTCGATGGCTGATGAATCAG
Seq A exon
ATGTTGGAATTTGTGGGCGCTTACAAAGCGATGGGGCAAGAGACATGGAAAGCCTCGTTGAGCTGGAGCAAGTGTTGTCTTTAGATTCGTCAGGAAGCTCAGTGAGTGGCATGGCGCTGTGGAGGCAGCAGCTCTGCGCAGTCGCGAAGGTTCGCTTCTTCAAGCTCAAGAATGAACGGAAAAGTCTGATGACTGT
Seq C2 exon
GTTATTGCTTTTTGGCATTAGCTTTGTCCCCCAACTTTTGGAACATCTCGTCTACAAGGTATACCACAAAAGTTATTCATGGGGGCTATCTCCAAGTATGTATTTCCTTTCACCAGGACAGCCACCACAGGATCCTCTGACCCACTTACTGGTCATCAATAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(0.7=3.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTAACCAAGGCATTGAGGA
R:
AGTGGGTCAGAGGATCCTGTG
Band lengths:
243-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: