MmuEX6090848 @ mm10
Exon Skipping
Gene
ENSMUSG00000041797 | Abca9
Description
ATP-binding cassette, sub-family A (ABC1), member 9 [Source:MGI Symbol;Acc:MGI:2386796]
Coordinates
chr11:110136038-110139638:-
Coord C1 exon
chr11:110139519-110139638
Coord A exon
chr11:110138134-110138329
Coord C2 exon
chr11:110136038-110136204
Length
196 bp
Sequences
Splice sites
3' ss Seq
TGGCTGACCTTACGTTTCAGATG
3' ss Score
8.58
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
ACCTTTACCGGGATCTTGATAGATGTTCTAACCAAGGCATTGAGGATTATGGCGTTTCCATGACAACCCTGAATGAGGTGTTCCTGAAGTTAGAAGGGAAGTCGATGGCTGATGAATCAG
Seq A exon
ATGTTGGAATTTGTGGGCGCTTACAAAGCGATGGGGCAAGAGACATGGAAAGCCTCGTTGAGCTGGAGCAAGTGTTGTCTTTAGATTCGTCAGGAAGCTCAGTGAGTGGCATGGCGCTGTGGAGGCAGCAGCTCTGCGCAGTCGCGAAGGTTCGCTTCTTCAAGCTCAAGAATGAACGGAAAAGTCTGATGACTGT
Seq C2 exon
GTTATTGCTTTTTGGCATTAGCTTTGTCCCCCAACTTTTGGAACATCTCGTCTACAAGGTATACCACAAAAGTTATTCATGGGGGCTATCTCCAAGTATGTATTTCCTTTCACCAGGACAGCCACCACAGGATCCTCTGACCCACTTACTGGTCATCAATAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041797-'22-24,'22-22,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF126982=ABC2_membrane_3=PU(0.7=3.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTAACCAAGGCATTGAGGA
R:
AGTGGGTCAGAGGATCCTGTG
Band lengths:
243-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types