GgaEX1007021 @ galGal4
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr7:15259440-15262203:-
Coord C1 exon
chr7:15262142-15262203
Coord A exon
chr7:15260423-15260605
Coord C2 exon
chr7:15259440-15259529
Length
183 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTTCTCCATCGCAGATG
3' ss Score
11.36
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
TTCTGATTTTCTGGCTTTAAAGTTAGGAGGCAAGGAACTGATCACCTGCTAATATTAAATGC
Seq A exon
ATGCCTTTGGTAGTCCAGCAGCACCCAACTACCCTGCATGTACAGCTGGAGTTTAACAGCTTTTAGGCAGTGACTTCAATCAGTGAAGTCTTCTCGAAATGATTGCTGATCATTCTCTTGTTCTTCTAAGATACAGAAATGATCACTGATCATTCTCCTGCTCTTCCAAGATACAGTCAAAGA
Seq C2 exon
GCAAGAAATTCTGAAGTGGAATGGATGGGGATATAATGACTCCAAATTCATATTCAATAAGAAGGGTCAAGCAGAATTCACAGGAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'5-4,'5-3,6-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000015032fB4833
Main Skipping Isoform:
ENSGALT00000015032fB4831
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGATTTTCTGGCTTTAAAGTTAGG
R:
TCCTGTGAATTCTGCTTGACCC
Band lengths:
146-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]